Guidelines for reporting single-cell RNA-seq experiments

Guidelines for reporting single-cell RNA-seq experiments

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Acknowledgements

This work was supported by the European Molecular Biology Laboratory; the Wellcome Trust Biomedical Resources grant Single Cell Gene Expression Atlas (108437/Z/15/Z); the California Institute for Regenerative Medicine (GC1R-06673-B); the Chan Zuckerberg Initiative DAF, an advised fund of the Silicon Valley Community Foundation (2018–182730); and the NIH Common Fund, through the Office of Strategic Coordination/Office of the NIH Director (OT2OD026677).

Author information

Author notes

  1. Laura Huerta

    Present address: Dotmatics Limited, Bishop’s Stortford, UK

Affiliations

  1. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK

    Anja Füllgrabe, Nancy George, Matthew Green, Silvie Korena Fexova, Mallory Ann Freeberg, Laura Huerta, Norman Morrison, Laura Clarke, John Marioni, Alvis Brazma & Irene Papatheodorou

  2. University of California, Santa Cruz, Santa Cruz, CA, USA

    Parisa Nejad, Clay Fischer & Jim Kent

  3. Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA

    Bruce Aronow

  4. J. Craig Venter Institute, Department of Pathology, University of California, San Diego, La Jolla, CA, USA

    Richard H. Scheuermann

  5. Department of Biomedical and Health Informatics, Children’s Hospital of Philadelphia, Philadelphia, PA, USA

    Deanne Taylor

  6. Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA

    Deanne Taylor

  7. Oregon Health & Science University, Portland, OR, USA

    Nicole Vasilevsky

  8. Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA

    Nils Gehlenborg

  9. Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK

    Sarah Teichmann

  10. Cavendish Laboratory, University of Cambridge, Cambridge, UK

    Sarah Teichmann

Contributions

A.F., N. George, M.G., P.N., B.A., S.K.F., C.F., M.A.F., L.H., D.T., N.V. and N.M. curated data and developed metadata standards; L.C., J.K., N.M., R.H.S., A.B. and I.P. supervised the project and engaged with the larger community; S.T. and J.M. provided support and evaluation of the standards and contributed to the manuscript; A.F., N. George, M.G., P.N., B.A., S.K.F., C.F., M.A.F., L.C., N. Gehlenborg, L.H., R.H.S., D.T., N.V., A.B. and I.P. wrote the manuscript.

Corresponding authors

Correspondence to
Anja Füllgrabe or Irene Papatheodorou.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Editorial note: This article has been peer reviewed.

Supplementary information

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